HPO Mapper 2 — Selectable LLM QC (Hugging Face InferenceClient.chat.completions)

Enter a pathological finding (e.g., chronic inflammation) and optional anatomical region (e.g., terminal ileum) to map it to the closest HPO term using Nomic embeddings.

QC is performed by InferenceClient.chat.completions. Choose the QC model from the dropdown (you can also type any HF model id).

If QC fails, you will see ERR: in the QC box and in the bulk output qc_raw column.

QC LLM (Hugging Face model id)

Pathological Finding

Anatomical Region (optional)

Similarity Threshold

0 1

HPO ID

HPO Term

Genes annotated to this HPO term

Similarity

LLM QC (blank=OK, 1=incorrect, ERR=API issue)

Visual outputs

Runtime status

Model to test in Runtime status

HF token env: HF_TOKEN
hp.json: hp.json (auto-download)
DB: /app/hpo_genes_with_synonyms.db